Junkers complaining about having their "rights" violated? They are lucky to be tolerated anywhere near lawful space, given their involvement in slavery, cardamine and all the other stuff that goes on while they're "collecting scrap". They might imagine themselves to be kinda like "Bubbles Depot" or Albert Steptoe but remember this is the group that has been assisting the AI Fleets that have been making smoothies using thousands of innocents harvested across Sirius.
I'm not one for getting into talking about loadouts in game but Corsair weapons could reasonably be taken by any officer to demonstrate 1. involvement in arms dealing and 2. involvement with the largest criminal organisation in Sirius.
And the lawfuls have every right to be zealous, given how many pirates operate in NY.