Being the Vice Admiral of The Order (or Black Squadron, for that matter), I'm going to say we keep SCRA on neutral, because we're only out there trying to protect humanity from the Nomads. It is the primary reason we exist as a whole. We knew of the Nomads before the rest of the Houses did, and we're out to stop them, and mainly them. The Bounty Hunters only see us as hostile because of Liberty wanting to remove us from taking out their infested forces. We gave the Coalition (before my time, I guess) the Osiris class battleships in exchange for protection against the Nomads when they're nearby. I have no reasons to see them as hostile forces to The Order. We fight our battles against the Nomads to save humanity, Coalition or not (in my point of view, of course).
Unless they see us as potential targets, I will regard them as neutral forces roaming about doing what they do. They pose no threat right now to an organisation that's just trying to make sure we're not all infested with the jellies.