By all means, get it fixed, as long as all ships that can mount a cd, get another hardpoint for engine-kill disruptors. It's part of a nice tactic and can make a huge difference in a battle (not only against gunships). The part that needs to get fixed is the part where allied npc's get hostile if a cd explodes near them. But i heard that the new mod won't have this "error" anylonger, don't know for sure though.