It's been my experience that another player, faction or not, can interrupt and ruin gameplay in a fighter craft armed with the prototype "Whinger" cannon as much, if not worse, than a cap. But I digress...
If someone, anyone, faction or not, disrputs gameplay, deal with it in game and in RP. There will most likely never, ever, be an announcement on these forums that faction x is now the arbiter of proper use of certain ships. You don't need to be told you have the power to do something that you can do anyway as long as you respect the server rules and the fact that the server is a RP one.
Role play. Lead by example. And carry a squad of bombers in your pocket.