would explain why people are on the Normandy when they shoulden't be, why the normandy is in a relay jump while it's supposed to be fighting, there is no concrete on the Citadel so why is there footage of him breathing in the rubble from London?
unless he didn't actually wake up from being hit by Harbinger's beam and when you pick the "bad" ending you are actually fighting to stay alive and since you fought the indoctrination you wake up to carry on the fight
I do LOVE this game so much except for the endings so im probably holding out hope that it isnt the real endings to the story especially since there is another singleplayer DLC coming out somepoint this year.
Though I didn't really care much for some of the characters, it did make me cry in more than a few places and I really hope they end it like they should be is a montage of you, garrus and a few others in Purgatory (the place on the Citadel while you are actually dead) having drinks and having a fun time while it shows you memories of your past missions or what happens to everyone especially you and your love interest