The entire solar system was destroyed when the sun was super-nova'd by a Nomad Battleship.
All of the Alliance and Coalition members in the solar system died, save one Alliance General.
Some time later, Atticus Rockford, the only surviving Alliance General finally reunited with the Alliance refugees to warn them, but was not believed.
He later founded the Order to help protect against the coming threat that only he knew about.
And that building in the center of Planet Manhattain was the sleeper ship, Liberty.
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Mephistoles