Desperately need some help

[tansytansey]

Okay, so I've been making a couple changes to the Greyhound model, making the pilot fit in the cockpit properly and stuff. I've got it all working fine except for one thing - whenever I launch from a base, the ship's textures changed. While docked however, they appear completely normal.

I've redone the changes twice to try and fix the problem, but I can't figure for the life of me what's wrong with it. Here's the screenshots of the problem.
http://img19.imageshack.us/img19/7398/screen2ope.png
http://img522.imageshack.us/img522/7496/screen1z.png
The ship not only is using one of the textures only, it's also displaying the texture co-ordinates in the wrong place. Yes, I did use DDS files this time, not TGA.
I've re-exported and hardpointed the changed model and mat file several times and I get the same result each time. I don't know what's going wrong. Help? D:
I'd like to get this sorted so I can submit the changes for 4.86 as soon as possible.

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